Wiki and Software Links


The Wiki is for registered users only!

Software at OICE:

3DScript plug-in for ImageJ/Fijideveloped by OICE3DScript Documentation is also available.
Fiji image processing.


Huygens SVI Essential software package for de-convolution and 3D reconstruction.

Leica Microsystems LAS fully licensed off-line workstation.


Carl Zeiss ZEN Lite



EVIDENT, Olympus Scientific Solutions


Imaris Microscopy Image Analysis Software



Links to useful resources for the interested microscopist:

Open Microscopy Environment

OME develops open-source software and data format standards for the storage and manipulation of biological microscopy data.


Fiji Is Just Image

Fiji is an image processing package.



ImageJ2ImageJDev is a federally funded, multi-institution project to develop the next-generation version of ImageJ, an image processing program widely used for scientific research.



μManager is a software package for control of automated microscopes.





CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.


FP Base Fluorescence SpectraViewer

You can plot and compare spectra and check the spectral compatibility for many fluorophores offered by Molecular Probes.


Cell Staining Simulation Tool

Stain your own cell by using our brand new cell staining simulation tool to develop reproducible results with many of our signature fluorescent dyes.

Nyquist online calculator

Here is an easy to use Nyquist online calculator!